rs49554972 SNP Detail

Summary

• ID
  rs49554972
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101052299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATTGGAAT GCAGGGATCA GGACCAGGGG ACCACAGAAA
  CAAGGACAGG GTTGTTCAGA GTAGAGGGAG AGGAGGGTGC TGGAGGGGGT GGGGTGGGGG
  A
  GCTGTGCTGA GCTGCTGCTG GCTAGATGCT GAGGAAGGTG ATGGAGAAAG GGAGAAGGAG
  GTAAGGCACT TCCTGGAGAC CTAAGGAAAG GACCCCAGC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135544450	ENSMUSSNP1447496	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320851101	CHEV_3_100948906	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49554972					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101052299 () rs orientation: forward

Symbol	Name	Function Class
Rr581969	regulatory region 581969	within coordinates