rs49554753 SNP Detail

Summary

• ID
  rs49554753
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102388197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAACCATG GAATGTCTTA
  GGTGTCTTAG TACTTGGCAC CTGAGCTTAG ATTGTGGCTG GGAGCTTCGT TCTCATATTT
  CCAACATATC CTTGTCTTAC CTGAGTTTAA AGGAAGATGT AGCTGTCAGC AAAGTATCTG
  TGTTCAGGTC TTCTTGGCCT GGCTTTCTGC CACTAGGGTG TGTACGGTTC TTTTCCAAAT
  R
  GTGCCTAGAA TCTCTTCTGG GAAAGCTTGG CTCCCTTGGC TCATGTGTCA GAACATAATA
  CTAAGTGTCA CAAGCCTTAT AGAAATGCGA CACAAACTTC AATAGACAAA AATGTTCAGA
  TTGGTGACTG TGATGGATCA CTAGACTCCA CAATAAAGTT GGAATTATAG CAAGAGAAGA
  GTCTAGCATT TGTCTTTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147115633	ENSMUSSNP65144	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320438848	CHEV_2_102398009	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49554753					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102388197 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pamr1	peptidase domain containing associated with muscle regeneration 1			Intron
				Noncoding-Transcript-Variant
Rr561705	regulatory region 561705			1086 bp proximal