rs49552496 SNP Detail

Summary

• ID
  rs49552496
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:4464254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAGGGGA CCATGCCTGA
  AAGAGAAACG GGTGGGAAAG AAGGAGGAGA CAAAGTAGAT GATCCTATCA AGGTCTGTTT
  ATTGTGAGCA AGGTTACAGA ATATAAGCAG TAAGAAGGAG GAAGGAGGTA AAGAGGGAGA
  AACTTGCCCC TGCCTCAGCC TGGGGGGCAG GGGTGGTTCT GCATAACTGC CCTGAAGTAC
  G
  CTATCTATTC TTAGCTCAGG GAACATCCTG TGGTTCTTTC TGGAAGTTTG CAGTTACTAT
  AATCTAATCT TGAGGTTCTG TCAGCTGTCA TTTCAAAAGG TCGGAAGTCT CTCCAGAAGA
  GAGGGGAACT TTGGCTCATG ACTCAGTGTC AGTTTCCAAC ATCTCTCAAA AGATCAGAAG
  TTTCTCAAGA AGGGAGGGGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145948743	ENSMUSSNP3555966	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49552496					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:4464254 () rs orientation: forward

Symbol	Name	Function Class
Rr588287	regulatory region 588287	within coordinates
Tssr40838	transcription start site region 40838	125 bp upstream