rs49549996 SNP Detail

Summary

• ID
  rs49549996
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152775461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGAGCAG TATGCTGCAT
  GTACAAGTTC ATGTGTGTAA ATGCGGGAGC TCTCATCCCA TGGTGTGTGC ATGGACCTCA
  GAGGTCGGCT GCTTGCCTAG GTCATCCTGA GAGCTGGCTT GCAAGCTTCC TGTCCCACTG
  TAGGAATCCT GGGACTGTAG ACTGTGCCTG GCTTTTCCTG GGTTCTGGGA ATCTGAACTC
  S
  GGTCCTCACA CTTGTGTGTA AGTTATTAGC CATTGAGCCA TCTGTCCAGC CTGGATTCAT
  TCACTGGTGG TGATAAAGTG TATGTTAGCT CTTCAGTTCC ATGACAGAGT AGACACAGCT
  TGAACTGGAC TCACGTGGAA GTGACTACAT ACTCATTTAA CAAGCCCACG GGTGCAGGTG
  TCTCCTCATG ATCTGGGTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136105995	ENSMUSSNP2540699	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
ss321029717	CHEV_3_152732788	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49549996					SNP	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152775461 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm40182	predicted gene, 40182	within coordinates
Gm66501	predicted gene, 66501	1302 bp upstream
Rr587647	regulatory region 587647	1310 bp proximal