rs49549961 SNP Detail

Summary

• ID
  rs49549961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152049238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTCTTAA TGGTTGAGGC
  ATTTCTCTGG CCCTTCCTAG CTTATTTTAA AATTATTATT ATTATTATTA TTAAAATTGT
  GTGTGCGTGT ATACACGTGT GTGTGTGCGT GCATGTAAGT GATAGTATCT TTGGAGGTCT
  GGGTATCAAA GGTGGTCAGC TCGCCTAGTC TAGTGATAAA GGGGTTTATA GGCTGCTCAA
  Y
  GTGGGAATTA AACTTGAACT TTCTACAAGA GTAATGTGCT TACACACACA CACACACACA
  CACACACACA CACACACACA CACTGTGTAC ATATGCAATA TTAATAAATA GAGTTAGTAC
  TTTTTCTTGT TTCCTGTCAC TATTGTGTAA TCAGCCTTAC CACAATCCGA CCACCTTACC
  TTTCTCTCTC TTTCTTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss136102560	ENSMUSSNP5870311	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321028696	CHEV_3_152006565	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs49549961					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152049238 () rs orientation: forward

Symbol	Name	Function Class
Rr587533	regulatory region 587533	within coordinates