rs49549411 SNP Detail

Summary

• ID
  rs49549411
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119824569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCT GCTTTGAGTC CATGAGCTCC
  R
  TGGGCCTGGC ATGTCCAGAA GACAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147347560	ENSMUSSNP7127349	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A		G
ss320478230	CHEV_2_119819824	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49549411					SNP	A	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119824569 () rs orientation: forward

Symbol	Name	Function Class
D2Ertd210e	DNA segment, Chr 2, ERATO Doi 210, expressed	1575 bp proximal
Mapkbp1	mitogen-activated protein kinase binding protein 1	Intron
Rr563617	regulatory region 563617	1341 bp distal
Rr563618	regulatory region 563618	1461 bp proximal