rs49549393 SNP Detail

Summary

• ID
  rs49549393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142148940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACAGTAT ATTTTAGATA
  TTACACATAT TTACACTATA TATCTTCAGA ATCTGAGAAT TATCAGGGAG GGTCTGTGAG
  TCTTGGCTTG TAGGAGCCCT CACTCTGGAA AACGTAGGCA GCGCTGCCCT GATGGATTTC
  AGGCTGAGTG ACAGGCTGAT GGTGAGCTAT TTTGGGCAAA GGGGCTCTCA TTGCAGCTGC
  Y
  TGTTTAAGAT GAAGGGCAAA GTTCGCTTGT ACAAGTCTAG CGTTGCCAGC CCACATGTTT
  ACTTTCACTT GTAAACACAG TACTTTGTGT CAGACGTTAT TTCCTTTGCA AATCATAGGT
  GGCACCGTTC TTAGTTATTT GACAACCAAT AAAGTATAAT GAATTCTAAA TGTTCAGCCA
  AGCTCACTTG GGAGTTACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61087255	NES16608383	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T	T	C	C	T		T	C	T	C		T
ss136013518	ENSMUSSNP2590869	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss321001638	CHEV_3_142106143	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49549393					SNP	T	T	T	C	T	T	T	T	C	C	T	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61087255	NES16608383	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142148940 () rs orientation: forward

Symbol	Name	Function Class
Gm64781	predicted gene, 64781	within coordinates
Rr586433	regulatory region 586433	698 bp distal
Rr586434	regulatory region 586434	within coordinates
Rr586435	regulatory region 586435	361 bp proximal