rs49548422 SNP Detail

Summary

• ID
  rs49548422
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:5405643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCT TCTCAGTCCC CAGGTCCCCA
  G
  TGAGTTACAT TATAACCCAA AGCTC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132936887	ENSMUSSNP146588	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321728972	CHEV_6_5355643	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49548422					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5405643 () rs orientation: forward

Symbol	Name	Function Class
Asb4	ankyrin repeat and SOCS box-containing 4	Intron
Rr626141	regulatory region 626141	1268 bp distal
Rr626142	regulatory region 626142	401 bp distal