rs49547149 SNP Detail

Summary

• ID
  rs49547149
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38864977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCATATA AGACTGGATT
  ATGGATTATA GTTAGGGCTG GCTTCTAAGA AAACCTCTGT CTATTCCAGA AATAAGATGG
  CCCCAGATTG ACCCAGGGTG ATCAAGAACA GGACTTACCT CCAGATACCA CAGGCAGGTC
  TTTGCAGCAT GGCTTGGTCT ACCCTCTGTT ATGGAGTTGG CAGTGGCTCT GTCACTTGCT
  W
  AAGTAAACCC AGACTGTGTG CCTACTCTGC CCGTGCCTGT GTGGGAAACA AGAGAACTGA
  GATTGCTGCT GAGGTGGGAT TATCGGGAGG TGAAGTTGTC ATCTCCATCC ATGTGTGGTG
  TCATTCCAAG GGATGTGCTG CACTGTGACA CGTTGTGATA CAATCACAGA TGTCGCTTTG
  TTTAAATGTT CTCTTAATTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60388583	NES15898498	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49547149					SNP	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60388583	NES15898498	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38864977 () rs orientation: forward

Symbol	Name	Function Class
Gm54204	predicted gene, 54204	within coordinates
Rr575706	regulatory region 575706	1005 bp proximal