rs49543951 SNP Detail

Summary

• ID
  rs49543951
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147515706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TATGAGCAGT GCAATAGTGT TAGGTTTATG GTACATGCCA
  CCTAAGTGTG ATTGCTGGCC AAAGACTACA ATTTATTCTC CATTAGTTAT TATTAAAGTC
  T
  CATTTTCCCC CATGAGAAAA TAAATTCTAC TGTTATTTTG TGTAAATGTT GACCATCCCC
  AACAGATTTA TCATTTATTT GGGAAACCAG AGTCTTTTTC A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss147959896	ENSMUSSNP6916734	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs49543951					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147515706 () rs orientation: forward

Symbol	Name	Function Class
Rr398815	regulatory region 398815	1738 bp downstream
Rr398816	regulatory region 398816	832 bp downstream
Rr398817	regulatory region 398817	within coordinates
Rr604487	regulatory region 604487	906 bp proximal