rs49542587 SNP Detail

Summary

• ID
  rs49542587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8638509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C GTGGTCACCA TTGAAAGTGG ACACCTTTCC AGGGCTATTT
  TTGAAATTAC TATCATGGAG CTTGTGATTC TGGTTTTTCT CCCTGACTTA TCATTTTCTC
  Y
  CTCTCCCCAT CCCCCCCCCA CCCCCTTTCT GTTTTAATAG CCAGAGTAAA TGTAGGCGAT
  TTCCCCTTTC CTGGGGCTTC TAAAACTGTC TTCCCAAATT G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146766624	ENSMUSSNP3960274	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49542587					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8638509 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr384117	regulatory region 384117			within coordinates
Rr427375	regulatory region 427375			1295 bp distal
Rr427376	regulatory region 427376			within coordinates
Rr427377	regulatory region 427377			759 bp proximal
Sash1	SAM and SH3 domain containing 1			Intron
				mRNA-UTR
Tssr3133	transcription start site region 3133			349 bp upstream
Tssr96640	transcription start site region 96640			486 bp upstream
Tssr96641	transcription start site region 96641			462 bp upstream
Tssr96642	transcription start site region 96642			431 bp upstream
Tssr96643	transcription start site region 96643			375 bp upstream
Tssr96644	transcription start site region 96644			279 bp upstream
Tssr96645	transcription start site region 96645			129 bp upstream