rs49541196 SNP Detail

Summary

• ID
  rs49541196
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:167262851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCCACACA GAAGCCAGGG ATAGCTGTTG GCATCTGTAA
  CCATAGGGAC AGGGAGACTG AGAAGGAGGA TCCCTGGGAG TTGTTGGCTA GCCACTATGT
  C
  GCGTCCCTAG TTTCAGGTTC ACTGTCTCAT AACTAAGGTG GAGCGTGAGT AAGGAAGACA
  TCTGATAACC TGGGACCTCC TAATGTACCC CACCCACCC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148263075	ENSMUSSNP4809450	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs49541196					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167262851 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12739	CpG island 12739	187 bp proximal
Gm74973	predicted gene, 74973	296 bp downstream
Rr397507	regulatory region 397507	515 bp upstream
Rr570576	regulatory region 570576	1884 bp distal
Rr570577	regulatory region 570577	1294 bp distal
Rr570578	regulatory region 570578	1546 bp distal
Rr570579	regulatory region 570579	1504 bp distal
Rr570580	regulatory region 570580	within coordinates
Rr570581	regulatory region 570581	538 bp proximal
Rr570582	regulatory region 570582	801 bp proximal
Rr570583	regulatory region 570583	1991 bp proximal
Slc9a8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	Noncoding-Transcript-Variant
Tssr21807	transcription start site region 21807	761 bp upstream
Tssr21808	transcription start site region 21808	775 bp upstream
Tssr21809	transcription start site region 21809	1106 bp upstream
Tssr27774	transcription start site region 27774	520 bp downstream