rs49538952 SNP Detail

Summary

• ID
  rs49538952
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:84040910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTCTGGAA GACACCAAAG GTTGTTCTCC AGCTCACCCC
  CTTTTCTCTC TCTCTCTCTA CACACACACA CACACACACA CACACACACA CACACACACA
  C
  AAGTGCATGC ACATACCCCC TACACTCTCC TTTTCCATCA TTTCCTATAA ACCAAATCTA
  AAGCTGTCCC TCCCAGAGTC TACTGATTTT TTTAAAAAA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135420895	ENSMUSSNP2295479	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320822418	CHEV_3_83937525	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49538952					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:84040910 () rs orientation: forward

Symbol	Name	Function Class
Mnd1	meiotic nuclear divisions 1	Intron
Rr578990	regulatory region 578990	1861 bp distal
Rr578991	regulatory region 578991	1783 bp proximal