rs49537033 SNP Detail

Summary

• ID
  rs49537033
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:150587818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGTGTCA ACTCAGACAA
  GATAGCCTTG CCTGCGTCCT TGCATTCCTT TTCATCTTTA CAGTCAAGAG CCCTGCCCTG
  GCATCCGGGC TCATAGACAA CTCTTTTACA TGAATCACAA GTTACAAAAT CTCATTTTCC
  TTCAGTACAC TGTACCACAA ATACCTTCCT GTTTAAAATC ATCATGTCTT TTGTAGTATA
  Y
  ACTTTAACTT CCAAACAATT ATCTCTCTTT AGCATCCAAA TACCAGGTTA ACTAAAAACG
  CAGTCTTTGT GGGGTCTTTT TCTTTTAAGT AGTATAAAAG CAGTTTTCCA ATTGAATGTA
  ATAATTTGGA AAAAAAAAAG TTTTGAGTTT TAGTGATGAT ACAAATTATG CTTAGGGAAA
  ATAATCAGAA AACTTTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60859606	NES15988848	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49537033					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60859606	NES15988848	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150587818 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17110	CpG island 17110	656 bp proximal
Gm71525	predicted gene, 71525	910 bp upstream
N4bp2l2	NEDD4 binding protein 2-like 2	Intron
Rr399543	regulatory region 399543	1291 bp upstream
Rr625784	regulatory region 625784	420 bp proximal
Rr625785	regulatory region 625785	921 bp proximal
Rr625786	regulatory region 625786	1235 bp proximal
Rr625787	regulatory region 625787	1249 bp proximal
Rr625788	regulatory region 625788	1514 bp proximal
Tssr49954	transcription start site region 49954	944 bp upstream
Tssr54667	transcription start site region 54667	859 bp downstream
Tssr54668	transcription start site region 54668	962 bp downstream
Tssr54669	transcription start site region 54669	1064 bp downstream
Tssr54670	transcription start site region 54670	1207 bp downstream