rs49536627 SNP Detail

Summary

• ID
  rs49536627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141294293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCCAATT CTCAGGTATC
  ACAATCGAAT TGCTAATTGA GGGCAGAACA AGCCAAGGAG ATGAACTTAG CACTGCTATG
  CAAATGCAGA CTATCCAGGA AATTAATATT TCATGTGTGC CTACCTCAAC AAGTAATGTT
  CCATTACAGG CTTGGTGTCA CTCAGCTGGG TGGCTGGCGC TGCTGCTTGT TGTCCTCGGC
  R
  AGGTCTTGAA CTTGGCTTTT TTTCTTTCGT GTTGCCTGCT GTCTTGGGAC CAGGCAGCAC
  ATCTGACATG CACTCAGTTG GCCCTTGCTG TGACCACAGA TCTTTACCAC TGCAAATAGA
  TGAGCTTGTT ATGATCCACG AGACATTATC AACTTGATTT CCTGTCTACG CAGTCAAGCA
  TTAGAAAGAG AAAAGCTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61092038	NES16588673	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G	A		G
ss320993570	CHEV_3_141251496	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49536627					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092038	NES16588673	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141294293 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			900 bp proximal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant