rs49535639 SNP Detail

Summary

• ID
  rs49535639
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:101008004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA TAATAAAAAT GTAGAAAAAT
  C
  TTGGCCCTCT GATTTAGTAT TAAAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148929857	ENSMUSSNP4807552	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321627745	CHEV_5_101289157	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49535639					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:101008004 () rs orientation: forward

Symbol	Name	Function Class
Gm73351	predicted gene, 73351	1878 bp upstream
Gpat3	glycerol-3-phosphate acyltransferase 3	Intron
Rr615578	regulatory region 615578	251 bp proximal
Rr615579	regulatory region 615579	1510 bp proximal
Rr615580	regulatory region 615580	1889 bp proximal
Tssr47495	transcription start site region 47495	1879 bp upstream