rs49535122 SNP Detail

Summary

• ID
  rs49535122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144920572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACAAAGTA CACATTTAAA AGTACACATG AGCTGTTAGC
  GCCCTACAGA TGTTCTTCTG CTCCGTGTGA GGCCCAAGCC AGAAAGCATC CATTAGCTCT
  R
  CTAAGCATCT AGAGCAGGCT TGAGGCCACT TCAAGGATTC CCTTAAGGAA TCTGGTTTCA
  GGGAGGTCCG CCAGGCTGGC CAGAATCCCA GAGTATTTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147848337	ENSMUSSNP6890432	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321412778	CHEV_4_144783905	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49535122					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144920572 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr398672	regulatory region 398672			915 bp upstream
Rr604318	regulatory region 604318			785 bp distal
Rr604319	regulatory region 604319			within coordinates
Rr604320	regulatory region 604320			346 bp proximal
Rr604321	regulatory region 604321			993 bp proximal
Rr604322	regulatory region 604322			1085 bp proximal
Tssr44481	transcription start site region 44481			951 bp downstream
Tssr44482	transcription start site region 44482			965 bp downstream
Tssr44483	transcription start site region 44483			997 bp downstream
Vps13d	vacuolar protein sorting 13D			Intron
				Noncoding-Transcript-Variant