rs49533889 SNP Detail

Summary

• ID
  rs49533889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54622687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGTGTGG TAAGAACGAT
  AGGATTCGGT CCATGATTCC TATTGAGGAA CAATAGGAAG GTTCCACGAT TCAGGGACAA
  TCAAGAACAC TTTTCTCGCC TGTATTCACC TTGAGCCTAC TTCCTTGTCC TAGCCCAATG
  TCAAAATCTT GCCTGAGCCT ACTCCCTCGT CCTAGCCCAG TGTAAATATT GTCAATATCC
  Y
  TGAAGCAGCA CCAAGAGCTC TCCACAATGC AAGAGACAGA TCGAGGGAGG GCTGCAGGCC
  ATTACCACGC CAGCCCAGAG TGTATTTCTC ATAGCCTTTT TATACTTGAG TACTGTGAGA
  AGCAGAGCCA CAAGCTAACA GAAACAATTC GCTGAGATAT ACACACAAGA CATTTGTTCC
  CATCCAAAAG CCTCTCTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149030206	ENSMUSSNP6383348	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49533889					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54622687 () rs orientation: forward

Symbol	Name	Function Class
Rr403785	regulatory region 403785	1007 bp upstream
Rr480227	regulatory region 480227	696 bp proximal
Rr480228	regulatory region 480228	794 bp proximal
Rr480229	regulatory region 480229	1414 bp proximal