rs49531312 SNP Detail

Summary

• ID
  rs49531312
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129895870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATG TGCCACTGGA TGATGATGCT
  M
  TGAGGGTTTT TGCTCGCTTG CTTGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135891735	ENSMUSSNP4024420	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss320964233	CHEV_3_129805139	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49531312					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129895870 () rs orientation: forward

Symbol	Name	Function Class
Rr585133	regulatory region 585133	1137 bp proximal
Rr585134	regulatory region 585134	1368 bp proximal
Rr585135	regulatory region 585135	1454 bp proximal