rs49530012 SNP Detail

Summary

• ID
  rs49530012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117886597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTGGGGGC TCAGGGTTAG CTCTAGTATA TTCTTACAGG
  GAGTCCTCTG CAGTTGCAGT TTAACATGGG AAGGGCCACA AAGTGGCAAA TATGGAGAAG
  Y
  TAATAGACCC AGAGGCTACA ATCGGAAGCT CTAAACTTTA ACCAGAGACT TTGAACGGTA
  GGGAGTATGG AAACTAGAGA ATGGGGTACA AGCAGTATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147297430	ENSMUSSNP1171646	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49530012					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117886597 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598283	regulatory region 598283			27 bp distal
Rr598284	regulatory region 598284			611 bp proximal
Rr598285	regulatory region 598285			1550 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr43028	transcription start site region 43028			162 bp upstream