rs49529603 SNP Detail

Summary

• ID
  rs49529603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152462712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTCAGT CTTGCAGGAT
  CCTCCTCGCC TCCCACTGCT TCACCTATGT ATGACAGATG ATAGGAACGA TAGGTGCTGG
  CTGGAATCCA ACAAGGTGTG GATGGTTTGG TCTCCCTCTC CCTCTTCATG GCTGTCCCAA
  GCTAATGCCA CCTCGAAGTC ACAGTGGCTC AGCTGGCCTC CTGTGTCAAA GCTCTTCCAC
  Y
  CGCCATGGTG TGCTTTTAAA CAGCTTGCTA ACTCTCAGTT CCCCACATAG ACCACACAGG
  AATGGAGCAG GAAGCCAGAG TGCCAACCTC CACCCAGTTC ACTTTGTGAC AGAAATTATT
  CAGCATGGGA GTGTTGTTCC TGAGCCCCGT GGGCGTGTCT GTCTTCCTCT CCAGCTGTCT
  TGGCCCATCT GCAGGAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147969848	ENSMUSSNP5586894	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320562581	CHEV_2_152446528	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49529603					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152462712 () rs orientation: forward

Symbol	Name	Function Class
Defb25	defensin beta 25	1564 bp downstream
Rr567404	regulatory region 567404	within coordinates
Tssr26844	transcription start site region 26844	1323 bp downstream
Tssr26845	transcription start site region 26845	1333 bp downstream