rs49526076 SNP Detail

Summary

• ID
  rs49526076
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:93870443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG CCCCTAAAGC TGCACGTTCA
  A
  TATTGTCACC CCACCCCGAT CTTTG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147378571	ENSMUSSNP1624332	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323407264	CHEV_10_93497326	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49526076					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93870443 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fgd6	FYVE, RhoGEF and PH domain containing 6			1420 bp upstream
Gm49628	predicted gene, 49628			within coordinates
Rr402165	regulatory region 402165			1134 bp upstream
Rr437370	regulatory region 437370			157 bp proximal
Rr437371	regulatory region 437371			1114 bp proximal
Rr437372	regulatory region 437372			1380 bp proximal
Rr437373	regulatory region 437373			1431 bp proximal
Tssr3327	transcription start site region 3327			1783 bp upstream
Tssr95293	transcription start site region 95293			868 bp upstream
Tssr95294	transcription start site region 95294			1463 bp upstream
Tssr95295	transcription start site region 95295			1476 bp upstream
Tssr98985	transcription start site region 98985			1147 bp downstream
Tssr98986	transcription start site region 98986			1190 bp downstream
Tssr98987	transcription start site region 98987			1208 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein			Intron
				Noncoding-Transcript-Variant