rs49524598 SNP Detail

Summary

• ID
  rs49524598
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17254986 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      C TAGTCTCCCA TGTCTGCTGA TAGAGGCTAA CAGAATCACA
  AGAGGAACAA GCTCTAACCA GAGACAACTA TAACAACTAA CTCCAGAGAT TACCAGATGG
  C
  GAAAGGCAAA CGTAGGAATC TTACTAACAG AAACCAAGAC CACTCACCAT CATCAGAACA
  CAGCACTCCC ACCTCACCCA GTATGGAGCA CCCCAACACA C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss134773287	ENSMUSSNP486728	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs49524598					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17254986 () rs orientation: reverse

Symbol	Name	Function Class
Rr573816	regulatory region 573816	1025 bp proximal