rs49524311 SNP Detail

Summary

• ID
  rs49524311
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19217569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATTGGAA CCAAGGGCTC
  GCCGTCCACG GAGTGCTAAA CAAATTTACA GCCATCGTGG CTCCGCGACT ACAATTCCCA
  GGGTTCCCGC GGCAGGAAGG GCTTCTGCTT CTGTGTGCAG ACACGCGAAC AGAATAGTTT
  ATCTTCAGCA AGTCTTCCAG GTCTGATAAA ACAACCTGTA ACCCTTCATC CACGTCTGTG
  M
  GTCTTTACCC AGAATCTTCG GACGTTTTTT TGTAGTTTTT ACTATGAACG TCGACACTGT
  TTGGCCTCTC TGGATTTCGT TCATTTCTTT TCAGTGCTGC TTTCTAGCAA AGCGAGGGAT
  GCGAAGTGCT TTTGTTGGGT TGGCCTAAGT GATTTGACAT TGAAAAGAAT TTTGTCTTTT
  CTCTTGTCAG AGACTTGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss134665481	ENSMUSSNP1797445	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49524311					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19217569 () rs orientation: forward

Symbol	Name	Function Class
Armc1	armadillo repeat containing 1	mRNA-UTR
Cpgi13000	CpG island 13000	7 bp distal
Gm65410	predicted gene, 65410	within coordinates
Rr397613	regulatory region 397613	101 bp downstream
Rr573944	regulatory region 573944	351 bp distal
Rr573945	regulatory region 573945	553 bp distal
Rr573946	regulatory region 573946	97 bp distal
Rr573947	regulatory region 573947	within coordinates
Rr573948	regulatory region 573948	1998 bp proximal
Tssr32687	transcription start site region 32687	320 bp upstream