rs49523921 SNP Detail

Summary

• ID
  rs49523921
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134601632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT TTGCGTAGGT ATGCTTGTTC
  T
  GCTGGTGCGT TGACCAGGAG TCTTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145511051	ENSMUSSNP123949	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss319983858	CHEV_1_136570471	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49523921					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134601632 () rs orientation: forward

Symbol	Name	Function Class
Rr418973	regulatory region 418973	510 bp proximal
Rr418974	regulatory region 418974	591 bp proximal
Syt2	synaptotagmin II	Intron