rs49523291 SNP Detail

Summary

• ID
  rs49523291
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127622621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAAAAGA CAATTATTAT
  ACACTTCCCA AGCAGCTGAC TTTTCATCTT ACATTAAGAA TTTATAACTT AATGCTCTAT
  ATCTGAACAA ACACAGCCAA CGGTGAAAGC CTGGGGCGTG GAGAAACCAT GATATAGTTG
  CCTAAAACAA ACTGCCATGT TTAAATAAAT CAACCAAACT AATCACAAGT AAAAGACACT
  C
  AGGCTGGCTT TACTCAGGTC TTTTGAATCC TGTGTTTCAC AAAGGCACAA GAGTTGCTTT
  CCTAAATTTA AGGAAAAAGA AGTCAGTATT TCACTGACTT GATTTCCAGC TCTGTGTGAC
  ATGAGCCAAG CCAACAGAGA GCGAGGTAAT AACATGGTAA GGAACAGACT CCCATTCACC
  AAGTACACAG GATAGGCCCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135872279	ENSMUSSNP7201763	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49523291					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127622621 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	583 bp downstream
Rr584870	regulatory region 584870	1456 bp distal
Rr584871	regulatory region 584871	1247 bp proximal
Rr584872	regulatory region 584872	1837 bp proximal