rs49522147 SNP Detail

Summary

• ID
  rs49522147
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185319156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGAATGA ACGGTTTTTA
  CAAAGCAGCC TTCTGGAATT TTGATGGCCA TTGTGCCAGT TCCACCGAGC ACTTTGCAGA
  GAAAGGAATA GTGAGATTTC TGAACATATG GACATGGGGA CATGTTGTGG TATGCCAGAG
  GAATTTGTGG GGAAATTAGA TAATTCTGGG ACAGGCTGCA AAGTGTGGTT ATCCTACCCC
  M
  TGTCCCCTTG TCACTATGTG ATGGCACCTC ACTGATGACA TAGTTCATGT CCCTTGTCAC
  TATGCGATGA TGTCTCACTG ATGACATAGT TCTTGAAGCT TTCTTTCACC ATAAAAGCTT
  CAAGATTTAT TATTCTTCTT GGCATAAGTA CATCAATAAA TAAACTTAAA ATCACAGAAT
  GTCTTTGATT AGGTTTTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146436983	ENSMUSSNP1848203	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
ss320177558	CHEV_1_187410838	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49522147					SNP	C	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185319156 () rs orientation: forward

Symbol	Name	Function Class
Rr425414	regulatory region 425414	1570 bp distal
Rr425415	regulatory region 425415	687 bp proximal