rs49521453 SNP Detail

Summary

• ID
  rs49521453
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:22034550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCTG TAGTCAGTTA CCTGCTCCGC
  S
  GGGCGAACAC GTGCGGGGGC AGACA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52177438	NES15227146	PERLEGEN	MM_PANEL2	f	SNP	G		G	C	G	G	C	C	C	G	C	G	C	C
ss146960195	ENSMUSSNP2897565	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49521453					SNP	G	G	G	C	G	G	C	C	C	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52177438	NES15227146	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22034550 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	within coordinates
Cpgi1374	CpG island 1374	536 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	within coordinates
Raet1e	retinoic acid early transcript 1E	mRNA-UTR
Rr384270	regulatory region 384270	682 bp upstream
Rr428833	regulatory region 428833	55 bp distal
Rr428834	regulatory region 428834	within coordinates
Tssr92677	transcription start site region 92677	246 bp downstream
Tssr92678	transcription start site region 92678	170 bp downstream
Tssr92679	transcription start site region 92679	114 bp downstream
Tssr92680	transcription start site region 92680	67 bp downstream