rs49520038 SNP Detail

Summary

• ID
  rs49520038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123031621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGTGGTTC ACAGTGTGGC TTGTAGTTGG CTCTCCACGA
  TGTTTTCACA GTATCGGTTA GAACTTTTCT TATTGATATG ACCAAATACT TGATAATAGT
  Y
  AATTTAAGGA AGAACTGATT CCCTCTGTAT TACAGTTAAA GAAGGGGTAT GACTCCCACA
  CTGGGGAAAT CAGGGCAATA GGCTCATGAG GCAGTGGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135760953	ENSMUSSNP1580195	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320918257	CHEV_3_122940890	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49520038					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123031621 () rs orientation: forward

Symbol	Name	Function Class
Rr584475	regulatory region 584475	1546 bp distal
Rr584476	regulatory region 584476	471 bp distal
Synpo2	synaptopodin 2	1823 bp upstream
Tssr35497	transcription start site region 35497	1850 bp upstream
Tssr35498	transcription start site region 35498	1815 bp upstream