rs49518424 SNP Detail

Summary

• ID
  rs49518424
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121665367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCAGACAA GGGGATCCAA AGTTCAAGGT CATAAATTCA
  AGGTCAGTGT GGGCACAAGG GACTTTATCT CAAATTTTAA ATTTTGAGGA AATTTTTAAA
  M
  CGTAAAAGAC AAAAGGAATT GATGCCTTCC TGATCATAAA ATTTGTTTAA CATGTCCACT
  TCAGATTCCC AGGGGCTCTT GACTAAACAT GCAAAATGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135730755	ENSMUSSNP2262134	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss320906558	CHEV_3_121574636	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49518424					SNP	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121665367 () rs orientation: forward

Symbol	Name	Function Class
Rr584188	regulatory region 584188	1694 bp distal
Rr584189	regulatory region 584189	715 bp distal
Rr584190	regulatory region 584190	110 bp proximal