rs49517794 SNP Detail

Summary

• ID
  rs49517794
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:149837508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG GCTCTCCTGT TGCCCTTTCC
  Y
  TCTCTGTTGT CTGCTCCACT TCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss134502940	ENSMUSSNP4202321	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325985564	CHEV_X_147489055	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49517794					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149837508 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fgd1	FYVE, RhoGEF and PH domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr694364	regulatory region 694364			within coordinates
Rr694365	regulatory region 694365			1133 bp proximal