rs49517494 SNP Detail

Summary

• ID
  rs49517494
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54622462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTGGGGGA GGGGGTAACA
  TAGTAGAAAG GAGAACCAGG TTTGATAAGA GTTGGGATTT TTATGTTTTA TCTGGAAGTT
  GTGGACCTGG GTGAGCCTCT GCAGTCCTAC CAGGTGAATT TAACCTGTAA AGGGTCCTCT
  GAAGGGGAGA TGGTCAGGAA TGTCTGTTAC CCGCTTGAGC TGGGTGTGAT GAATCCAGGG
  R
  GTGATCCCAG CAACCTTGAT AGCAATGGGT GTGGTAAGAA CGATAGGATT CGGTCCATGA
  TTCCTATTGA GGAACAATAG GAAGGTTCCA CGATTCAGGG ACAATCAAGA ACACTTTTCT
  CGCCTGTATT CACCTTGAGC CTACTTCCTT GTCCTAGCCC AATGTCAAAA TCTTGCCTGA
  GCCTACTCCC TCGTCCTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149030186	ENSMUSSNP3712791	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49517494					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54622462 () rs orientation: forward

Symbol	Name	Function Class
Rr403785	regulatory region 403785	1232 bp upstream
Rr480227	regulatory region 480227	921 bp proximal
Rr480228	regulatory region 480228	1019 bp proximal
Rr480229	regulatory region 480229	1639 bp proximal