rs49516581 SNP Detail

Summary

• ID
  rs49516581
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150411314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAT GCCAGGATAG GGTATCGGTT
  T
  CCACCATGTG TTTGCTGGGA ATTGA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148052170	ENSMUSSNP742038	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321429017	CHEV_4_149700966	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49516581					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150411314 () rs orientation: forward

Symbol	Name	Function Class
D030004A10Rik	RIKEN cDNA D030004A10 gene	1846 bp upstream
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr605276	regulatory region 605276	818 bp proximal