rs49516449 SNP Detail

Summary

• ID
  rs49516449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139301054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTC CAAATAGGTG GTACTCCATA
  Y
  TGCAGCAAGG CATTCGGGAG AATTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147674706	ENSMUSSNP6596704	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321382457	CHEV_4_139129658	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49516449					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139301054 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15171	CpG island 15171	within coordinates
Iffo2	intermediate filament family orphan 2	Intron
Rr603244	regulatory region 603244	487 bp proximal
Rr603245	regulatory region 603245	788 bp proximal
Rr603246	regulatory region 603246	881 bp proximal
Tssr39955	transcription start site region 39955	901 bp upstream
Tssr39956	transcription start site region 39956	954 bp upstream