rs49516148 SNP Detail

Summary

• ID
  rs49516148
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148546759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCG AGGAAAAGGT GCTTCCCACT
  C
  AGCCTGGTGA CTTGAGTTTT ATCCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148008310	ENSMUSSNP2260315	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321420592	CHEV_4_147836411	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49516148					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148546759 () rs orientation: forward

Symbol	Name	Function Class
Mtor	mechanistic target of rapamycin kinase	Intron
Rr604688	regulatory region 604688	878 bp distal
Rr604689	regulatory region 604689	319 bp distal
Rr604690	regulatory region 604690	652 bp proximal
Rr604691	regulatory region 604691	762 bp proximal
Rr604692	regulatory region 604692	1184 bp proximal