rs49514883 SNP Detail

Summary

• ID
  rs49514883
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:143024102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG CAGCCTGGAT ACAACTGGCC
  R
  CATGGCCACC TCTCTGAACA CCCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147779100	ENSMUSSNP7021592	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321403820	CHEV_4_142887435	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49514883					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143024102 () rs orientation: forward

Symbol	Name	Function Class
Pdpn	podoplanin	Intron
Rr604188	regulatory region 604188	1031 bp distal
Rr604189	regulatory region 604189	within coordinates
Rr604190	regulatory region 604190	779 bp proximal
Rr604191	regulatory region 604191	1921 bp proximal
Tssr44447	transcription start site region 44447	1743 bp downstream
Tssr44448	transcription start site region 44448	1933 bp downstream
Tssr44449	transcription start site region 44449	1966 bp downstream