rs49514858 SNP Detail

Summary

• ID
  rs49514858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178305127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GGGAGTGTTT TCACCACAAA GAGACAGCAA GTGTTTATTG
  TGTGCTGATT ACTACCTTAT CATTACACAA TGCACACATG CATCAAAACA TCACATTTTC
  Y
  CATAAATATG TACAATTATA TGTCAATCAA AAGTAACGTA AAACAAGAGT AGGAAAGGCC
  TGGTGAGATA GGAGTATAAC GCCCCACACT ACCTCACAGG G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss148367436	ENSMUSSNP1789792	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs49514858					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178305127 () rs orientation: forward

Symbol	Name	Function Class
Gm35695	predicted gene, 35695	within coordinates
Rr397573	regulatory region 397573	1649 bp upstream
Rr572447	regulatory region 572447	548 bp distal
Rr572448	regulatory region 572448	1549 bp proximal
Rr572449	regulatory region 572449	1843 bp proximal