rs49514235 SNP Detail

Summary

• ID
  rs49514235
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152497067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGG CACACAATAC AGGTAGATTT
  T
  AAAATTATAT AAAAGAAAAC CCCAC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147970951	ENSMUSSNP7011322	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320562931	CHEV_2_152480883	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49514235					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152497067 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	817 bp upstream
Rr374088	regulatory region 374088	1172 bp downstream
Rr567410	regulatory region 567410	1576 bp distal
Rr567411	regulatory region 567411	806 bp distal
Rr567412	regulatory region 567412	305 bp distal
Rr567413	regulatory region 567413	707 bp proximal
Tssr26849	transcription start site region 26849	888 bp upstream
Tssr26850	transcription start site region 26850	881 bp upstream
Tssr26851	transcription start site region 26851	843 bp upstream
Tssr26852	transcription start site region 26852	814 bp upstream