rs49513979 SNP Detail

Summary

• ID
  rs49513979
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139364037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C GATTGTGATG AGACATCGTC ATGTGTGGTT GTCACAGCCT
  TTTTGTTTGG CTTGAGATTC AAGGGATTTT AGGAAGCACC CTGAAGGTCT TAGATTCAAG
  S
  GATTTTAGGA AGCACCCTGA AGGTCTTAGT CTCCTACGCT ACACACTCTA ACAATATGCC
  AAAGAATTAT GAACCGCGTA CCTCTGCAAG ATGGTCAGAG G                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss147676674	ENSMUSSNP5633670	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs49513979					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139364037 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aldh4a1	aldehyde dehydrogenase 4 family, member A1			Intron
				Noncoding-Transcript-Variant
Gm21969	predicted gene 21969			Intron
Rr603268	regulatory region 603268			25 bp distal
Rr603269	regulatory region 603269			139 bp distal
Rr603270	regulatory region 603270			1188 bp proximal