rs49510362 SNP Detail

Summary

• ID
  rs49510362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153298815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACACACAA AATAGATATA
  AATAAATCTC TCTTTAATGG AGAACCTGAA GCAAGGCGCT GACGTATTCC TTTTATCTGT
  CAGCAGGGAT CTTCTCAACT GCAGCTCTAA GAAAGAAACT GCAGCCTTCG CTGACATCTG
  GGGACAGCAT GTTTACTCAC CTGACAATCA CAATCACAAA TGTGCATCTG GACAGTGACA
  Y
  TGGGAATATG CCTTTTCCCC TCTGGAACAA AACATGCTTC CTCCCATGAA AGTTGGTGAC
  CACAAGCTGT GTCACTAAGT CTTGGCACGC CTTCAGGAAG AAGCCAGGGC TTAGGCCCTG
  ATAACACGGG TTTACCCACC AGCATCTATG TAAAGAACCT GGCCCATCAT TATGCAGTCA
  AGACAAGGGG CCTGTCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136109415	ENSMUSSNP4859951	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49510362					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153298815 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32721	predicted gene, 32721			within coordinates
Rr587708	regulatory region 587708			1575 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant