rs49507765 SNP Detail

Summary

• ID
  rs49507765
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126434934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTACCATTTT GGATATTCAG TCATAGGTAG GTAGGATTAT
  TTAAATCTTC TAAATGTTTT TTTTAAATAA ATTAACTCCC TTATGTGTGT GTGTGTGTGT
  K
  TCTGTGTGCA TGTGGAAGTC AAAGGGCAGA GACAACTTAT AGGAGCTTAT TCTCTCCTAC
  CGTGATGATT CTGGACATTG AACTTGGTTC TAAGGCTTGG C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135837712	ENSMUSSNP3779195	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49507765					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126434934 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584664	regulatory region 584664			1434 bp distal
Rr584665	regulatory region 584665			143 bp distal
Rr584666	regulatory region 584666			within coordinates
Rr584667	regulatory region 584667			1845 bp proximal