rs49507532 SNP Detail

Summary

• ID
  rs49507532
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:4343645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGACAACT AACATCCAAA
  TGTCCTTGGG TTTTTAAAAA ATAACTAGGA AGATACATTG TTATTTTGAA TAAAGTAGGT
  TTTCATTGTT TCACATATAT GCTATAATAA TATATATTGA GTGGCATGTT TTCACGTAAT
  GAGATTTCAC TTTGCAGCTT CAAATTATTT CTTAATATTC TAAACATACA CCAACAATTT
  K
  TTTCTTAAAT GTTATAATTT TCTCTCTCTA TATATATTAT ATTTTAAACA AGAGCTTTAG
  TATATTTCAA AAATATAAGG TATAGAACCT GAAAACATGG TATGAAAACT AGTTTCTTGT
  AATATTATAT TTTTTGAGTA TCCTGCTTAA GTATTTTTGG TGTGCTGTTT TTAAGAACAA
  ATGTTTCAGG GGTTACCAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60365954	NES15871712	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49507532					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60365954	NES15871712	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:4343645 () rs orientation: forward

Symbol	Name	Function Class
Rr573153	regulatory region 573153	192 bp distal
Rr573154	regulatory region 573154	1829 bp proximal