rs49506964 SNP Detail

Summary

• ID
  rs49506964
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97832910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGGTCC TCTGCCGTAA
  GCTCTGCACC TCGCACTTTC TAGAGTCACC TTTTAGAGCC TTTCAGTGTT CTGTCTGTCT
  TAGGTCTGAC TATGTTGTGA CCACAGATCT TTATAGGAAC ACAGCCTGAC ACTCCCTGTT
  CCCTTTGCCA TCTGGCAGGC AACAGATTCT GTCCTGTGAG TCATACTCTA AATGTAGACG
  M
  TTTAACTTTC AGATGTGAAT GGGTTTGGTG GGTCTCAAGT CAGCAGCAAA GAAGGGGAAA
  GGCTGTGACT GGCACCTGCC CTTGCAGTCC CAGGAGAGGA CGGTGAAATC CAGCTTTCAG
  AGCAGTCATT CAACTCTGGT GTGAAAGAAG GTTCCAGAGC CACTGAAGGG CTCCCCAAGC
  CACTCATCAT CTCCTCGCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60915478	NES16223141	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49506964					SNP	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60915478	NES16223141	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97832910 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635228	regulatory region 635228	within coordinates
Rr635229	regulatory region 635229	681 bp proximal
Rr635230	regulatory region 635230	1722 bp proximal
Tssr1946	transcription start site region 1946	1196 bp downstream