rs49506370 SNP Detail

Summary

• ID
  rs49506370
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77036809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTGCTG TTGAGATCGT
  CCAGTGTGGA CTCTGCAAGC AGGCGAGACA ACATGGCGGG AGGAGGGCAT ACAGACAGGA
  GGTGAAGGAG GGAGTGGAGG AGTAGAGAGT AAATCAGTCC CTGATGGGGA AAGAGATGGA
  CCCACAGGCA TCATTCTGTC TGCTCTTTGT AGCAGAGTGC CTGCCTGGAG CTGTGTGGGC
  R
  CTCATGGGTA ACACCTACCT CTTTCTACTC TGGGAAGACC CAAGGATTCA TGGCAGTCTG
  TAGGGTGAGA AGAGGCCTTT AAATTTCCCC ACAGCAGCCC TCTGAGTCCC CTTTCTACTT
  CAAGTGGCTG GACCTAATCC ACTAGTGGTG GGGCAGCCAG AAAGGGAACC CAACTGAGAG
  GAGAGTCCCA GCAGGAGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52373237	NES15266639	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49506370					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373237	NES15266639	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77036809 () rs orientation: forward

Symbol	Name	Function Class
Gm67806	predicted gene, 67806	within coordinates
Rr384958	regulatory region 384958	within coordinates
Rr434428	regulatory region 434428	1014 bp proximal
Tssr94215	transcription start site region 94215	1202 bp upstream
Tssr94216	transcription start site region 94216	1222 bp upstream
Tssr98230	transcription start site region 98230	1637 bp upstream
Tssr98231	transcription start site region 98231	222 bp downstream