rs49505873 SNP Detail

Summary

• ID
  rs49505873
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174333986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAGAAG TAGGTGGAAT
  TCTGGGCAGC CTAGTCTACA GAGTGAGTTC CATGACAGCC AAAGGTACAC ACAGAGGAAC
  ATTTTTTTTT TTCCAAAAAT GAACAAACAA AAGAGAATTA ATTTTGCCTT GTTTTATTTT
  TAAATTGACA GCAGCCACTA AGGACTACTA AAGTTTTTTG GAAAAGAAAA ATTACGAGTA
  M
  GAAGTAGACC ATTGTGACCG AAGAGACAGA TGCTGAGAAG CGGCGTGCCA CTCAGGGGGA
  GCCATTAGAT GCAAATTAAG AGAGATTACC AGGTTGGGGC TTCTGAACTT ACCGAATCAA
  AGCACACCCT GTTCAGAGCT GGTGCCTGTG TGTTGAAATG GAGACTTCTG TATACTTTTA
  CTCAAAGTAC GGATGGACTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss148344130	ENSMUSSNP4979335	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs49505873					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174333986 () rs orientation: forward

Symbol	Name	Function Class
Rr572141	regulatory region 572141	763 bp proximal
Rr572142	regulatory region 572142	866 bp proximal