rs49505054 SNP Detail

Summary

• ID
  rs49505054
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:15257906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAACAAACA AACAAACAAA CAAACAAACA AAACTAAAAA
  TGACCTGAAA GAACATCCAA AGACTCTCCT TTCCTTTCAG CTGTGATGTC ATGGTATCTG
  W
  CACTAAACTA CTCTCAATTA CGAAACTTTA GATAAAAGTA AACAAACAAA AACTGGAAAA
  CTGTTTCAAA GTAGTCAGTC ATATCTATTC CTCATTGCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60373005	NES15871335	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T		A	A	T	A	A	A	A
ss134620092	ENSMUSSNP4724852	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49505054					SNP	A	A	A	A	A	A	T	T	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60373005	NES15871335	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:15257906 () rs orientation: forward

Symbol	Name	Function Class
Rr573761	regulatory region 573761	1410 bp proximal
Rr573762	regulatory region 573762	1560 bp proximal
Rr573763	regulatory region 573763	1713 bp proximal