rs49503950 SNP Detail

Summary

• ID
  rs49503950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101469454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCAATCC TGCCTCCTAA
  CTGTGTAGAA TTTGAAATCT GTGTGAAATC ATATGAAACC CATACTTTCA ACCCCACTCC
  CCCCCCCAAA ATCTTTATTT TCATGCATAC TTTGTGAAAA CAAATTGAGA CAAAATTAAA
  TTCCTGTCCA CCTGAGAGAG AAAGACATCT TTCCCCACTG CTCTGGCATC TGTGTGCATG
  Y
  TTTTAATCCC AAGACACTTC TTAACCTCTC ACCCACCATT CATCAATTTT CATCAGCTAC
  AGTCACTGGT CCCCACAGTG CGCGGCAGAA GGCTGGCACG TAGACCTGTA GAAACAGGCT
  TCCAGTTTCA GAGCAGAAAA AAATGCATTG TACTTCTCCA GCCCTGCTGG GGCAGGGGGT
  GGGGTGGGGG AGTGGGGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147079093	ENSMUSSNP4528664	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss320429663	CHEV_2_101479266	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49503950					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101469454 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	502 bp proximal
Tssr25364	transcription start site region 25364	993 bp downstream
Tssr25365	transcription start site region 25365	1117 bp downstream