rs49503687 SNP Detail

Summary

• ID
  rs49503687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68953882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG CTTGTTAGGA AACGTTCATT
  R
  TAGCCCCATC TAAGTCTCTG GCCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135264694	ENSMUSSNP479159	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320791801	CHEV_3_68850471	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49503687					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68953882 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13256	CpG island 13256	1025 bp distal
Gm65005	predicted gene, 65005	182 bp downstream
Rr578118	regulatory region 578118	1805 bp distal
Rr578119	regulatory region 578119	1417 bp distal
Rr578120	regulatory region 578120	1646 bp distal
Rr578121	regulatory region 578121	296 bp distal
Rr578122	regulatory region 578122	1185 bp distal
Rr578123	regulatory region 578123	within coordinates
Trim59	tripartite motif-containing 59	1807 bp upstream
Tssr29529	transcription start site region 29529	1462 bp downstream
Tssr29530	transcription start site region 29530	1413 bp downstream
Tssr33523	transcription start site region 33523	1890 bp upstream
Tssr33524	transcription start site region 33524	1882 bp upstream
Tssr33525	transcription start site region 33525	1786 bp upstream
Tssr33526	transcription start site region 33526	1575 bp upstream
Tssr33527	transcription start site region 33527	1550 bp upstream