rs49503506 SNP Detail

Summary

• ID
  rs49503506
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112186442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACACGGAAA GACATGGAAT GTCTAGCTAG GGCCACACTT
  GCCCACTGAG GTGCAGGGAG AGGAAGAACA GCAGTGGTGT AAAGTGACAG CAGGATCCTA
  T
  CTCTAGTATC CTCACTCGTG CAGGCAAACA CTCTTGGGGA GACCCCAAAA TGGCCAGGAT
  GTGAGGCCAA TGCTTGTTCT GACCCTGCTC CTGTAACAG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133558898	ENSMUSSNP5675394	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321908057	CHEV_6_112159475	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49503506					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112186442 () rs orientation: forward

Symbol	Name	Function Class
1700054K19Rik	RIKEN cDNA 1700054K19 gene	1227 bp upstream
Rr636305	regulatory region 636305	1884 bp distal
Rr636307	regulatory region 636307	539 bp distal
Rr636308	regulatory region 636308	500 bp distal
Rr636309	regulatory region 636309	712 bp proximal
Rr636310	regulatory region 636310	1213 bp proximal
Rr636311	regulatory region 636311	1673 bp proximal