rs49502373 SNP Detail

Summary

• ID
  rs49502373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:142983506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATGTCCT CTCTGTCCTC
  CATGGGCACT GCATGTATGT GACACACTCA CTCACATGCA GGCAAACACT CATACCCATA
  CAATTTTTAA AAGTTACAGA TGATCCCAGT ACTCGGGAGG CAGAGGCAGG CGGATTTCTG
  AGTTCAAGGC CAGCCTGTCT ACAAAGTGAG TTCCAGGACA GCCAGGGCTA TACAGAGAAA
  Y
  CCTGTCTCAA AAAAACAAAA CAAAACAAAA AAAAAGTTAA AGATGACTAT GGTTGATGAA
  TACATATGTA AATTTCAGTG GATTTATAAT AATCAAGGTG AGATGGGAAG ACATAGAAAG
  AAAAGAAAAA ATGAAGGGAA AAAGAAAAAC AGCAACTCAG AAGAAAAAAA AAAGTATTAA
  TCATGTCACC CGAGGGTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147777672	ENSMUSSNP750255	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49502373					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142983506 () rs orientation: forward

Symbol	Name	Function Class
Rr604180	regulatory region 604180	1535 bp proximal
Rr604181	regulatory region 604181	1843 bp proximal